Acta Med. 2016, 59: 54-58

https://doi.org/10.14712/18059694.2016.54

Carrier molecules and extraction of circulating tumor DNA for next generation sequencing in colorectal cancer

Martin Beráneka,b,*, Igor Sirákc, Milan Vošmikc, Jiří Peterac, Monika Drastíkováb, Vladimír Paličkab

aDepartment of Biochemical Sciences, Charles University, Faculty of Pharmacy in Hradec Králové, Czech Republic
bInstitute of Clinical Biochemistry and Diagnostics, University Hospital Hradec Králové, Charles University, Faculty of Medicine in Hradec Králové, Czech Republic
cDepartment of Oncology, University Hospital Hradec Králové, Charles University, Faculty of Medicine in Hradec Králové, Czech Republic

Received February 10, 2016
Accepted April 18, 2016

Crossref Cited-by Linking

  • Aguilar Héctor, López-Roldán Belén, Vilalta-Lacarra Anna, Alkorta-Aranburu Gorka, Claramunt R., López-Guerrero José Antonio, Sandiego S., Gil-Bazo I.: Liquid biopsy for monitoring minimal residual disease in localized and locally-advanced non-small cell lung cancer after radical-intent treatment. The Journal of Liquid Biopsy 2024, 4, 100145. <https://doi.org/10.1016/j.jlb.2024.100145>
  • Song Ho Hyun, Park Hyeran, Cho Doohwan, Bang Hae In, Oh Hyuk-Jin, Kim Jieun: Optimization of a Protocol for Isolating Cell-free DNA From Cerebrospinal Fluid. Ann Lab Med 2024, 44, 294. <https://doi.org/10.3343/alm.2023.0267>
  • Ye Peng, Cai Peiling, Xie Jing, Zhang Jie: Reliability of BRAF mutation detection using plasma sample. Medicine 2021, 100, e28382. <https://doi.org/10.1097/MD.0000000000028382>
  • Ye Peng, Cai Peiling, Xie Jing, Wei Yuanyuan, Shields Anthony F.: The diagnostic accuracy of digital PCR, ARMS and NGS for detecting KRAS mutation in cell-free DNA of patients with colorectal cancer: A systematic review and meta-analysis. PLoS ONE 2021, 16, e0248775. <https://doi.org/10.1371/journal.pone.0248775>
  • Hoorzook K. B., Barnard T. G., Kalendar Ruslan: Absolute quantification of E. coli virulence and housekeeping genes to determine pathogen loads in enumerated environmental samples. PLoS ONE 2021, 16, e0260082. <https://doi.org/10.1371/journal.pone.0260082>
  • Xie Wenli, Xie Li, Song Xianrang: The diagnostic accuracy of circulating free DNA for the detection of KRAS mutation status in colorectal cancer: A meta‐analysis. Cancer Medicine 2019, 8, 1218. <https://doi.org/10.1002/cam4.1989>
  • Fettke Heidi, Kwan Edmond M., Azad Arun A.: Cell-free DNA in cancer: current insights. Cell Oncol. 2019, 42, 13. <https://doi.org/10.1007/s13402-018-0413-5>
  • Bronkhorst Abel Jacobus, Ungerer Vida, Holdenrieder Stefan: The emerging role of cell-free DNA as a molecular marker for cancer management. Biomolecular Detection and Quantification 2019, 17, 100087. <https://doi.org/10.1016/j.bdq.2019.100087>
  • Bach Sander, Sluiter Nina R, Beagan Jamie J, Mekke Joost M, Ket Johannes C F, van Grieken Nicole C T, Steenbergen Renske D M, Ylstra Bauke, Kazemier Geert, Tuynman Jurriaan B: Circulating Tumor DNA Analysis: Clinical Implications for Colorectal Cancer Patients. A Systematic Review. JNCI Cancer Spectrum 2019, 3. <https://doi.org/10.1093/jncics/pkz042>
  • Ackerman A. Lenore, Anger Jennifer Tash, Khalique Muhammad Umair, Ackerman James E., Tang Jie, Kim Jayoung, Underhill David M., Freeman Michael R., Staley Christopher: Optimization of DNA extraction from human urinary samples for mycobiome community profiling. PLoS ONE 2019, 14, e0210306. <https://doi.org/10.1371/journal.pone.0210306>
  • Kastrisiou Myrto, Zarkavelis George, Pentheroudakis George, Magklara Angeliki: Clinical Application of Next-Generation Sequencing as A Liquid Biopsy Technique in Advanced Colorectal Cancer: A Trick or A Treat?. Cancers 2019, 11, 1573. <https://doi.org/10.3390/cancers11101573>
  • Lee Hoyoon, Na Wonhwi, Park Chanhee, Park Kyong Hwa, Shin Sehyun: Centrifugation-free extraction of circulating nucleic acids using immiscible liquid under vacuum pressure. Sci Rep 2018, 8. <https://doi.org/10.1038/s41598-018-23766-9>
  • Cao Bo, Zhou Xin, Yang Wanli, Ma Jiaojiao, Zhou Wei, Fan Daiming, Hong Liu: The role of cell-free DNA in predicting colorectal cancer prognosis. Expert Review of Gastroenterology & Hepatology 2018, 12, 39. <https://doi.org/10.1080/17474124.2017.1372191>
  • Yang M., Forbes M.E., Bitting R.L., O'Neill S.S., Chou P -C, Topaloglu U., Miller L.D., Hawkins G.A., Grant S.C., DeYoung B.R., Petty W.J., Chen K., Pasche B.C., Zhang W.: Incorporating blood-based liquid biopsy information into cancer staging: time for a TNMB system?. Annals of Oncology 2018, 29, 311. <https://doi.org/10.1093/annonc/mdx766>
  • Hsu Hung-Chih, Lapke Nina, Wang Chuang-Wei, Lin Pei-Yi, You Jeng Fu, Yeh Chien Yuh, Tsai Wen-Sy, Hung Hsin Yuan, Chiang Sum-Fu, Chen Hua-Chien, Chen Shu-Jen, Hsu An, Yang Tsai Sheng: Targeted Sequencing of Circulating Tumor DNA to Monitor Genetic Variants and Therapeutic Response in Metastatic Colorectal Cancer. Molecular Cancer Therapeutics 2018, 17, 2238. <https://doi.org/10.1158/1535-7163.MCT-17-1306>
  • Nakashima Chiho, Sato Akemi, Abe Tomonori, Kato Junichi, Hirai Mitsuharu, Nakamura Tomomi, Komiya Kazutoshi, Sueoka Eisaburo, Kimura Shinya, Sueoka-Aragane Naoko: Automated DNA extraction using cellulose magnetic beads can improve EGFR point mutation detection with liquid biopsy by efficiently recovering short and long DNA fragments. Oncotarget 2018, 9, 25181. <https://doi.org/10.18632/oncotarget.25388>
  • Wan Jonathan C. M., Massie Charles, Garcia-Corbacho Javier, Mouliere Florent, Brenton James D., Caldas Carlos, Pacey Simon, Baird Richard, Rosenfeld Nitzan: Liquid biopsies come of age: towards implementation of circulating tumour DNA. Nat Rev Cancer 2017, 17, 223. <https://doi.org/10.1038/nrc.2017.7>
  • Tang Min, Deng Zhenghua, Li Baolin, Peng Ying, Song Min, Liu Jinbo: Circulating Tumor DNA is Effective for Detection of KRAS Mutation in Colorectal Cancer: A Meta-Analysis. Int J Biol Markers 2017, 32, 421. <https://doi.org/10.5301/ijbm.5000295>
Crossref Cited-by Linking logo